HuBMAP-wide data products contain consolidated data for all datasets of a particular assay type and tissue, across all datasets, assay variants, and data providers. RNA-seq data products are added as both raw and processed versions: 'raw' features gene expression count matrices from the HuBMAP RNA-seq pipeline, and 'processed' versions are the results of secondary analysis (normalization, filtering, dimensionality reduction, clustering) applied to the raw matrix.
| Tissue Type | Creation Time | Assay Type | Number of Datasets | Total Raw Cells | Number Raw Cell Types | Total Processed Cells | Number Processed Cell Types | Raw Data Product Download | Processed Data Product Download | Shiny App | (All Versions) |
|---|---|---|---|---|---|---|---|---|---|---|---|
Ovary (Left) |
Nov. 26, 2024, 6:51 p.m. | multiome-rna-atac | 15 | 81924 | NA | 44972 | NA | Raw h5mu | Processed h5mu | NA | All versions of Ovary (Left) |
|
Ovary (Left) |
Nov. 13, 2024, 2:53 p.m. | rna-seq | 43 | 139637 | NA | 84675 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Ovary (Left) |